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Getting Started Screencasts PDF Print
Written by Sarkis Dallakian   

Shows how to prepare ligand and use AutoDock Wizard. Please note that pdb structure has been changed since I made this video (see, for instance, pdb-l: Modifying existing PDBs and pdb-l: Chain order changes: a problem for Proteopedia). Please use PyRx's built-in text editor available under Documents tab (or any other text editor) as described in Load/Import Molecule. I have also made a local copy of hiv-1protease1.pdb that you can use to follow this screencast.

 


                                                                                                                                                                                                                                                                                       

Shows how to read SDF files, do energy minimization and convert them into PDBQT.

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Last Updated on Friday, 12 March 2010 14:04
 
Molecular Surface and Mayavi PDF Print
Written by Sarkis Dallakian   

Molecular Surfaces Using IsoSurfaces

Mayavi User Guide

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Last Updated on Thursday, 05 May 2011 08:54
 
Neuraminidase, Sialic Acid, Relenza and Sugar PDF Print
Written by Sarkis Dallakian   

 

Watch this video in HD on Vimeo. Links used in the screencast - Relenza, Neuraminidase, Sugar and ws.nbcr.net.

 

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Last Updated on Sunday, 24 January 2010 10:00
 
Introduction to PyRx Workspace PDF Print
Written by Sarkis Dallakian   

This is a brief introduction to PyRx workspace. It shows where PyRx stores different files and how to create a new workspace.

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Last Updated on Tuesday, 10 February 2015 21:33
 
Tables Widget and New Features in PyRx 0.5 PDF Print
Written by Sarkis Dallakian   

Blog post mentioned in the video:Thermal Shift Assay for Inhibitors of 15-Hydroxyprostaglandin Dehydrogenase

 

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Last Updated on Sunday, 04 April 2010 17:21
 
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